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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   frontometaphyseal dysplasia
  

Disease ID 923
Disease frontometaphyseal dysplasia
Synonym
fmd - frontometaphyseal dysplasia
frontometaphyseal dysostosis
frontometaphyseal dysplasia (disorder)
Orphanet
OMIM
UMLS
C0265293
SNOMED-CT
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:1)
2316  |  FLNA  |  CLINVAR;CTD_human;ORPHANET;UNIPROT
Inferring Gene(Waiting for update.)
Text Mined Gene(Waiting for update.)
Locus
Symbol | Locus(Total Locus:2)
MAP3K7  |  6q15
FLNA  |  Xq28
Disease ID 923
Disease frontometaphyseal dysplasia
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:74)
HP:0000689  |  Misalignment of upper and lower dental arches
HP:0006487  |  Bowing of the long bones
HP:0002777  |  Tracheal stenosis
HP:0006335  |  Delayed loss of primary teeth
HP:0009768  |  Widening of phalanges of the hand
HP:0004608  |  Anteriorly placed odontoid process
HP:0000071  |  Ureteral stenosis
HP:0000336  |  Prominent supraorbital ridges
HP:0001166  |  Long, slender fingers
HP:0000316  |  Increased distance between eye sockets
HP:0000218  |  High palate
HP:0009650  |  Short distal phalanx of the thumb
HP:0006466  |  Ankle contracture
HP:0000347  |  Micrognathia
HP:0001239  |  Wrist flexion deformity
HP:0008661  |  Urethral stenosis
HP:0000126  |  Hydronephrosis
HP:0008451  |  Posterior vertebral hypoplasia
HP:0006482  |  Abnormality of dental morphology
HP:0005453  |  Absent/hypoplastic paranasal sinuses
HP:0000316  |  Hypertelorism
HP:0002949  |  Fused cervical vertebrae
HP:0000684  |  Delayed eruption of teeth
HP:0006155  |  Long finger bone
HP:0006380  |  Contractures of knees
HP:0009465  |  Ulnar deviation of finger
HP:0003779  |  Antegonial notching of mandible
HP:0000407  |  Sensorineural hearing impairment
HP:0009804  |  Reduced number of teeth
HP:0010493  |  Long metacarpals
HP:0001249  |  Mental retardation
HP:0009004  |  Hypoplasia of the musculature
HP:0000494  |  Downslanted palpebral fissures
HP:0008097  |  Partial fusion of tarsals
HP:0000307  |  Small pointed chin
HP:0003312  |  Abnormal form of the vertebral bodies
HP:0010307  |  Stridor
HP:0000218  |  Increased palatal height
HP:0003202  |  Neurogenic muscle atrophy, especially in the lower limbs
HP:0002650  |  Scoliosis
HP:0003042  |  Elbow dislocation
HP:0000940  |  Abnormal diaphysis morphology
HP:0004493  |  Craniofacial hyperostosis
HP:0006665  |  Coat hanger sign of ribs
HP:0002857  |  Genu valgum
HP:0000431  |  Broad nasal root
HP:0000331  |  Decreased height of chin
HP:0006207  |  Partial fusion of carpals
HP:0000405  |  Conductive hearing impairment
HP:0005616  |  Accelerated skeletal maturation
HP:0002987  |  Elbow contracture
HP:0001592  |  Selective tooth agenesis
HP:0010103  |  Short distal phalanx of hallux
HP:0001363  |  Craniosynostosis
HP:0002700  |  Big foramen magnum
HP:0001634  |  Mitral valve prolapse
HP:0001833  |  large feet
HP:0005048  |  Synostosis of carpal bones
HP:0001387  |  Joint stiffness
HP:0006160  |  Irregular metacarpals
HP:0000072  |  Megaureter
HP:0001007  |  Hirsutism
HP:0100490  |  Camptodactyly of finger
HP:0000407  |  sensorineural hearing loss
HP:0000280  |  Coarse facial features
HP:0001648  |  Cor pulmonale
HP:0000494  |  Downward slanting palpebral fissures
HP:0001607  |  Subglottic stenosis
HP:0003691  |  Scapula alata
HP:0006695  |  Atrioventricular canal defect
HP:0100807  |  Long fingers
HP:0000944  |  Abnormality of the metaphyses
HP:0002673  |  Coxa valga
HP:0006440  |  Increased density of long bone diaphyses
Text Mined Phenotype(Waiting for update.)
Disease ID 923
Disease frontometaphyseal dysplasia
Manually Symptom
UMLS  | Name(Total Manually Symptoms:2)
C0040583  |  tracheal stenosis
C0026267  |  mitral valve prolapse
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:3)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs137853312NA2316FLNAumls:C0265293CLINVARNA0.481628651NAFLNAX154360238GA
rs28935471NA2316FLNAumls:C0265293CLINVARNA0.481628651NAFLNAX154360319TG
rs28935471126125832316FLNAumls:C0265293UNIPROTWe identified localized mutations in FLNA that conserve the reading frame and lead to a broad range of congenital malformations, affecting craniofacial structures, skeleton, brain, viscera and urogenital tract, in four X-linked human disorders: otopalatodigital syndrome types 1 (OPD1; OMIM 311300) and 2 (OPD2; OMIM 304120), frontometaphyseal dysplasia (FMD; OMIM 305620) and Melnick-Needles syndrome (MNS; OMIM 309350).0.4816286512003FLNAX154360319TG
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:33)
HP ID HP Name MP ID MP Name Annotation
HP:0000431Wide nasal bridgeMP:0006292abnormal nasal placode morphologyany structural anomaly in the paired ectodermal placodes that come to lie in the bottom of the olfactory pits as the pits are deepened by the growth of the surrounding medial and lateral nasal processes; the nasal placode gives rise to the olfactory epith
HP:0009465Ulnar deviation of fingerMP:0010178increased number of Howell-Jolly bodiesabnormal presence of basophilic nuclear remnants of condensed DNA (1 to 2 um in diameter) in circulating erythrocytes, typically seen in severe hemolytic anemias or after splenectomy; these inclusions are normally removed by the spleen but will persist in
HP:0009650Short distal phalanx of the thumbMP:0004180failure of initiation of embryo turningfailure to begin the axial rotation of the germ layers of the embryo during the primitive streak/early somite stage
HP:0006695Atrioventricular canal defectMP:0010420muscular ventricular septal defectabnormal communications between the two lower chambers of the heart, involving the muscular septum and often occurring as multiple communications, and includes central muscular or midmuscular, apical, or marginal communications when the defect is along th
HP:0002949Fused cervical vertebraeMP:0004620cervical vertebral fusionthe union of one or more cervical vertebrae into a single structure
HP:0005048Synostosis of carpal bonesMP:0012528abnormal zone of polarizing activity morphologyany structural anomaly of the subset of cells found in the posterior mesenchyme region of the vertebrate limb bud; Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb along the
HP:0004608Anteriorly placed odontoid processMP:0000159abnormal xiphoid process morphologyany structural anomaly of the caudal tip of the sternum
HP:0000689Dental malocclusionMP:0000120malocclusionperturbations in the normal patterned arrangement of the teeth or alignment of the jaw, resulting in the incorrect position of biting or chewing surfaces of the upper and lower teeth
HP:0006487Bowing of the long bonesMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0001387Joint stiffnessMP:0003098decreased tendon stiffnessreduced ability of tendon to maintain tensile strength and load
HP:0006155Long phalanx of fingerMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0009804Reduced number of teethMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0006335Persistence of primary teethMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0000218High palateMP:0011615submucous cleft palatea cleft of the palate with cardinal signs including a bifid uvula, a V-shaped notch at the back of the hard palate, and/or a translucent line in the midline of the soft palate and a short palate
HP:0000405Conductive hearing impairmentMP:0006325impaired hearingreduced ability to perceive auditory stimuli
HP:0006482Abnormality of dental morphologyMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0003312Abnormal form of the vertebral bodiesMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0006665Coat hanger sign of ribsMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0002700Large foramen magnumMP:0004679xiphoid process foramenthe appearance of a hole or holes in the caudal tip of the sternum
HP:0003779Antegonial notching of mandibleMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0000407Sensorineural hearing impairmentMP:0006330syndromic hearing impairmenthearing impairment that is usually associated with malformations of the external ear and other inherited signs and symptoms
HP:0001634Mitral valve prolapseMP:0010617thick mitral valve cuspsan increase in the ratio of the mitral valve cusp wall thickness to the atrioventricular septum thickness
HP:0000280Coarse facial featuresMP:0008018increased facial tumor incidencegreater than the expected number of neoplasms on the face, usually in the form of a distinct mass, in a specific population in a given time period
HP:0008097Partial fusion of tarsalsMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0006440Increased density of long bone diaphysesMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
HP:0000684Delayed eruption of teethMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0100490Camptodactyly of fingerMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0003202Skeletal muscle atrophyMP:0014068abnormal muscle glycogen levelthe normal concentration of a readily converted carbohydrate reserve in muscle tissue
HP:0005616Accelerated skeletal maturationMP:0003378early sexual maturationpubertal changes occur at an earlier than normal age
HP:0000944Abnormality of the metaphysesMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0001592Selective tooth agenesisMP:0013293embryonic lethality prior to tooth bud stagedeath prior to the appearance of tooth buds (Mus: E12-E12.5)
HP:0009768Broad phalanges of the handMP:0010919increased number of pulmonary neuroendocrine bodiesgreater number of the corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the air
HP:0006207Partial fusion of carpalsMP:0009886failure of palatal shelf elevationthe palatal shelves fail to move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue
Mapped by homologous gene(Total Items:68)
HP ID HP Name MP ID MP Name Annotation
HP:0000071Ureteral stenosisMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0002650ScoliosisMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0009004Hypoplasia of the musculatureMP:0011100preweaning lethality, complete penetrancedeath of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)
HP:0001634Mitral valve prolapseMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0009465Ulnar deviation of fingerMP:0013901absent female preputial glandabsence of the paired, lobulated, modified sebaceous glands located on the side of the clitoris in female rodents; in contrast to the preputial glands in male rodents, clitoral glands are a minor source of olfactory stimuli contributing to sexual attracti
HP:0001007HirsutismMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000689Dental malocclusionMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0004493Craniofacial hyperostosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0003691Scapular wingingMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0004608Anteriorly placed odontoid processMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0002777Tracheal stenosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0005616Accelerated skeletal maturationMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0001833Long footMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0003202Skeletal muscle atrophyMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0006335Persistence of primary teethMP:0020080increased bone mineralizationincrease in the rate at which minerals are deposited into bone
HP:0002673Coxa valgaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0006466Ankle contractureMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000347MicrognathiaMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000940Abnormal diaphysis morphologyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000316HypertelorismMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0001239Wrist flexion contractureMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000407Sensorineural hearing impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000331Short chinMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0001363CraniosynostosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002949Fused cervical vertebraeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000126HydronephrosisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0006160Irregular metacarpalsMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0001607Subglottic stenosisMP:0013785abnormal mammary gland bud morphologyany structural anomaly of the morphologically distinct bulb of epithelial cells formed once each mammary placode expands and invaginates into the underlying mesenchyme; in mouse embryos at E12.5, each epithelial bud with its contiguous mesenchyme is eleva
HP:0009768Broad phalanges of the handMP:0014176abnormal cilary zonule morphologyany structural anomaly of the circumferential suspensory ligaments that anchor the lens to the ciliary process and are made of bundles of fibrillin microfibrils, an elaborate system of fibers that spans the gap between the lens and the adjacent nonpigment
HP:0003042Elbow dislocationMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002857Genu valgumMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0009804Reduced number of teethMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010307StridorMP:0013293embryonic lethality prior to tooth bud stagedeath prior to the appearance of tooth buds (Mus: E12-E12.5)
HP:0006380Knee flexion contractureMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0006487Bowing of the long bonesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0100490Camptodactyly of fingerMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010493Long metacarpalsMP:0005562decreased mean corpuscular hemoglobinless than the average levels of hemoglobin contained in an erythrocyte
HP:0000405Conductive hearing impairmentMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000336Prominent supraorbital ridgesMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001249Intellectual disabilityMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0008661Urethral stenosisMP:0013501increased fibroblast apoptosisincrease in the timing or the number of fibroblast cells undergoing programmed cell death
HP:0008097Partial fusion of tarsalsMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0006665Coat hanger sign of ribsMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0003779Antegonial notching of mandibleMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0002987Elbow flexion contractureMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001592Selective tooth agenesisMP:0014166ectopic cranial bonethe appearance of an extra bone structure at an atypical location in or near the cranium
HP:0001648Cor pulmonaleMP:0014233bile duct epithelium hyperplasia
HP:0006695Atrioventricular canal defectMP:0013504increased embryonic tissue cell apoptosisincrease in the timing or the number of cells in embryonic tissue undergoing programmed cell death
HP:0000218High palateMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000072HydroureterMP:0014044absent cardiac outflow tractabsence of or complete failure to form the common arterial trunk that normally forms the aorta and pulmonary artery and the ventricular outflow regions
HP:0000684Delayed eruption of teethMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000494Downslanted palpebral fissuresMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0003312Abnormal form of the vertebral bodiesMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001166ArachnodactylyMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0002700Large foramen magnumMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000280Coarse facial featuresMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0100807Long fingersMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0006440Increased density of long bone diaphysesMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0001387Joint stiffnessMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000307Pointed chinMP:0014178increased brain apoptosisincrease in the number of cells of the brain undergoing programmed cell death
HP:0005048Synostosis of carpal bonesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0008451Posterior vertebral hypoplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0009650Short distal phalanx of the thumbMP:0012431increased lymphoma incidencegreater than the expected number of neoplasms characterized by a proliferation of malignant lymphocytes in lymphoid tissue in a specific population in a given time period
HP:0000431Wide nasal bridgeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0006482Abnormality of dental morphologyMP:0014176abnormal cilary zonule morphologyany structural anomaly of the circumferential suspensory ligaments that anchor the lens to the ciliary process and are made of bundles of fibrillin microfibrils, an elaborate system of fibers that spans the gap between the lens and the adjacent nonpigment
HP:0000944Abnormality of the metaphysesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0006207Partial fusion of carpalsMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
HP:0006155Long phalanx of fingerMP:0012253abnormal intersomitic vessel morphologyany structural anomaly of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites
Disease ID 923
Disease frontometaphyseal dysplasia
Case(Waiting for update.)